Caldera, Juan
first name: Juan
last name: Caldera
full name: Juan Raphael Caldera, PhD
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person in primary position: Clinical Assistant Professor
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type: Agent
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selected publications: Authorship 8298
selected publications: Authorship 8251
selected publications: Authorship 7683
selected publications: Authorship 7669
selected publications: Authorship 7671
selected publications: Authorship 7668
selected publications: Authorship 7641
selected publications: Authorship 7626
selected publications: Authorship 7598
selected publications: Authorship 7592
selected publications: Authorship 7584
selected publications: Authorship 7573
selected publications: Authorship 7551
selected publications: Authorship 7543
selected publications: Authorship 7483
selected publications: Authorship 8184
selected publications: Authorship 8172
selected publications: Authorship 8057
selected publications: Authorship 8048
selected publications: Authorship 7472
fax: Not Available
research areas: High-Throughput Nucleotide Sequencing
research areas: Dysentery, Bacillary
research areas: Vaccines
research areas: Staphylococcal Vaccines
research areas: Whole Genome Sequencing
mailing address: https://profiles.cdrewu.edu/profile/6077548
middle name or initial: Raphael
positions: Clinical Assistant Professor
phone: Not Available
preferred title: Clinical Assistant Professor

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Whole Genome Sequencing
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Dysentery, Bacillary
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Seki, Ekihiro
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Walton, Jasmine
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High-Throughput Nucleotide Sequencing
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Kalantar-Zadeh M.D., Kamyar
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Sanchez, Oscar
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Staphylococcal Vaccines
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Vaccines
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Tsao, James
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Coleman, Anne
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Ross, Michael
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Ezra-Simbwa, Reynard
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Assari, Shervin
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https://profiles.cdrewu.edu/profile/6077548
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address line 1: 1731 E. 120th Street
city: Los Angeles
postal code: 90059
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Authorship 7472
type: Authorship
author rank in publication: 2
linked author: Caldera, Juan
linked information resource: Harnessing antifungal immunity in pursuit of a Staphylococcus aureus vaccine strategy.

Authorship 7483
type: Authorship
author rank in publication: 7
linked author: Caldera, Juan
linked information resource: Case Report: Symptomatic Herpes Simplex Virus Type 2 and Monkeypox Coinfection in an Adult Male.

Authorship 7543
type: Authorship
author rank in publication: 1
linked author: Caldera, Juan
linked information resource: Extensively Drug-Resistant Shigella flexneri 2a, California, USA, 2022.

Authorship 7551
type: Authorship
author rank in publication: 2
linked author: Caldera, Juan
linked information resource: Clinical next-generation sequencing assay combining full-length gene amplification and shotgun sequencing for the detection of CMV drug resistance mutations.

Authorship 7573
type: Authorship
author rank in publication: 3
linked author: Caldera, Juan
linked information resource: Nosocomial infections by diverse carbapenemase-producing Aeromonas hydrophila associated with combination of plumbing issues and heat waves.

Authorship 7584
type: Authorship
author rank in publication: 1
linked author: Caldera, Juan
linked information resource: FDA trial regulation of laboratory developed tests (LDTs): An academic medical center's experience with Mpox in-house testing.

Authorship 7592
type: Authorship
author rank in publication: 10
linked author: Caldera, Juan
linked information resource: Functional divergence of a bacterial enzyme promotes healthy or acneic skin.

Authorship 7598
type: Authorship
author rank in publication: 1
linked author: Caldera, Juan
linked information resource: The characteristics of pre-existing humoral imprint determine efficacy of S.?aureus vaccines and support alternative vaccine approaches.

Authorship 7626
type: Authorship
author rank in publication: 1
linked author: Caldera, Juan
linked information resource: Performance Evaluation of a Commercial Automated Library Preparation System for Clinical Microbial Whole-Genome Sequencing Assays.

Authorship 7641
type: Authorship
author rank in publication: 2
linked author: Caldera, Juan
linked information resource: Getting to the Root of Dental Pain-a Hard Palate Ulcer.

Authorship 7668
type: Authorship
author rank in publication: 1
linked author: Caldera, Juan
linked information resource: Cluster of extensively drug-resistant Shigella sonnei carrying blaCTX-M-15 in Los Angeles, California, 2023 to 2024.

Authorship 7669
type: Authorship
author rank in publication: 3
linked author: Caldera, Juan
linked information resource: Pathobiont-driven antibody sialylation through IL-10 undermines vaccination.

Authorship 7671
type: Authorship
author rank in publication: 4
linked author: Caldera, Juan
linked information resource: Pathobiont-induced suppressive immune imprints thwart T cell vaccine responses.

Authorship 7683
type: Authorship
author rank in publication: 11
linked author: Caldera, Juan
linked information resource: Real-world clinical impact of plasma cell-free DNA metagenomic next-generation sequencing assay.

Authorship 8048
type: Authorship
author rank in publication: 4
linked author: Caldera, Juan
linked information resource: Mortality Risk Profiling of Staphylococcus aureus Bacteremia by Multi-omic Serum Analysis Reveals Early Predictive and Pathogenic Signatures.

Authorship 8057
type: Authorship
author rank in publication: 12
linked author: Caldera, Juan
linked information resource: Translocation of Viable Gut Microbiota to Mesenteric Adipose Drives Formation of Creeping Fat in Humans.

Authorship 8172
type: Authorship
author rank in publication: 3
linked author: Caldera, Juan
linked information resource: Integrating complex host-pathogen immune environments into S.?aureus vaccine studies.

Authorship 8184
type: Authorship
author rank in publication: 2
linked author: Caldera, Juan
linked information resource: Non-protective immune imprint underlies failure of Staphylococcus aureus IsdB vaccine.

Authorship 8251
type: Authorship
author rank in publication: 1
linked author: Caldera, Juan
linked information resource: Multi-Year Analysis of Respiratory Viral Dynamics Reveals Significance of Rhinovirus in Young Children with Severe Respiratory Illness.

Authorship 8298
type: Authorship
author rank in publication: 1
linked author: Caldera, Juan
linked information resource: Development and validation of next-generation sequencing-based clinical test for triazole resistance prediction in Aspergillus fumigatus.

Harnessing antifungal immunity in pursuit of a Staphylococcus aureus vaccine strategy.
PubMed Identifier: 32817694
author list: Paterson MJ, Caldera JR, Nguyen C, Sharma P, Castro AM, Kolar SL, Tsai CM, Limon JJ, Becker CA, Martins GA, Liu GY, Underhill DM
published in: PLoS pathogens
information resource reference: Harnessing antifungal immunity in pursuit of a Staphylococcus aureus vaccine strategy. PLoS Pathog. 2020 08; 16(8):e1008733.
journal title abbreviation: PLoS Pathog
publication date: 2020-08-20T00:00:00
year: 2020
type: Academic Article
type: Article
type: Document
type: Information Resource

Mortality Risk Profiling of Staphylococcus aureus Bacteremia by Multi-omic Serum Analysis Reveals Early Predictive and Pathogenic Signatures.
PubMed Identifier: 32888495
author list: Wozniak JM, Mills RH, Olson J, Caldera JR, Sepich-Poore GD, Carrillo-Terrazas M, Tsai CM, Vargas F, Knight R, Dorrestein PC, Liu GY, Nizet V, Sakoulas G, Rose W, Gonzalez DJ
published in: Cell
information resource reference: Mortality Risk Profiling of Staphylococcus aureus Bacteremia by Multi-omic Serum Analysis Reveals Early Predictive and Pathogenic Signatures. Cell. 2020 09 03; 182(5):1311-1327.e14.
journal title abbreviation: Cell
publication date: 2020-09-03T00:00:00
year: 2020
type: Academic Article
type: Article
type: Document
type: Information Resource

Integrating complex host-pathogen immune environments into S.?aureus vaccine studies.
PubMed Identifier: 35594849
author list: Tsai CM, Hajam IA, Caldera JR, Liu GY
published in: Cell chemical biology
information resource reference: Integrating complex host-pathogen immune environments into S.?aureus vaccine studies. Cell Chem Biol. 2022 05 19; 29(5):730-740.
journal title abbreviation: Cell Chem Biol
publication date: 2022-05-19T00:00:00
year: 2022
type: Academic Article
type: Article
type: Document
type: Information Resource

Non-protective immune imprint underlies failure of Staphylococcus aureus IsdB vaccine.
PubMed Identifier: 35803276
author list: Tsai CM, Caldera JR, Hajam IA, Chiang AWT, Tsai CH, Li H, D?ez ML, Gonzalez C, Trieu D, Martins GA, Underhill DM, Arditi M, Lewis NE, Liu GY
published in: Cell host & microbe
information resource reference: Non-protective immune imprint underlies failure of Staphylococcus aureus IsdB vaccine. Cell Host Microbe. 2022 08 10; 30(8):1163-1172.e6.
journal title abbreviation: Cell Host Microbe
publication date: 2022-07-07T00:00:00
year: 2022
type: Academic Article
type: Article
type: Document
type: Information Resource

Case Report: Symptomatic Herpes Simplex Virus Type 2 and Monkeypox Coinfection in an Adult Male.
PubMed Identifier: 36375467
author list: Prabaker KK, de St Maurice A, Uslan DZ, Yen GC, Manavi S, Gray HK, Caldera JR, Chan JL, Garner OB, Yang S
published in: The American journal of tropical medicine and hygiene
information resource reference: Case Report: Symptomatic Herpes Simplex Virus Type 2 and Monkeypox Coinfection in an Adult Male. Am J Trop Med Hyg. 2022 12 14; 107(6):1258-1260.
journal title abbreviation: Am J Trop Med Hyg
publication date: 2022-11-14T00:00:00
year: 2022
type: Academic Article
type: Article
type: Document
type: Information Resource

Extensively Drug-Resistant Shigella flexneri 2a, California, USA, 2022.
PubMed Identifier: 37204919
author list: Caldera JR, Yang S, Uslan DZ
published in: Emerging infectious diseases
information resource reference: Extensively Drug-Resistant Shigella flexneri 2a, California, USA, 2022. Emerg Infect Dis. 2023 07; 29(7):1473-1475.
journal title abbreviation: Emerg Infect Dis
publication date: 2023-05-19T00:00:00
year: 2023
type: Academic Article
type: Article
type: Document
type: Information Resource

Nosocomial infections by diverse carbapenemase-producing Aeromonas hydrophila associated with combination of plumbing issues and heat waves.
PubMed Identifier: 37778710
author list: Gray HK, Bisht A, Caldera JR, Fossas Braegger NM, Cambou MC, Sakona AN, Beaird OE, Uslan DZ, Walton SC, Yang S
published in: American journal of infection control
information resource reference: Nosocomial infections by diverse carbapenemase-producing Aeromonas hydrophila associated with combination of plumbing issues and heat waves. Am J Infect Control. 2024 03; 52(3):337-343.
journal title abbreviation: Am J Infect Control
publication date: 2023-09-29T00:00:00
year: 2023
type: Academic Article
type: Article
type: Document
type: Information Resource

FDA trial regulation of laboratory developed tests (LDTs): An academic medical center's experience with Mpox in-house testing.
PubMed Identifier: 37866092
author list: Caldera JR, Gray HK, Garner OB, Yang S
published in: Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology
information resource reference: FDA trial regulation of laboratory developed tests (LDTs): An academic medical center's experience with Mpox in-house testing. J Clin Virol. 2023 12; 169:105611.
journal title abbreviation: J Clin Virol
publication date: 2023-10-10T00:00:00
year: 2023
type: Academic Article
type: Article
type: Document
type: Information Resource

Getting to the Root of Dental Pain-a Hard Palate Ulcer.
PubMed Identifier: 39028878
author list: Preston RC, Caldera JR, Gray HK, Lam JC
published in: Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
information resource reference: Getting to the Root of Dental Pain-a Hard Palate Ulcer. Clin Infect Dis. 2024 07 19; 79(1):237-239.
journal title abbreviation: Clin Infect Dis
publication date: 2024-07-19T00:00:00
year: 2024
type: Academic Article
type: Article
type: Document
type: Information Resource

Cluster of extensively drug-resistant Shigella sonnei carrying blaCTX-M-15 in Los Angeles, California, 2023 to 2024.
PubMed Identifier: 39667596
author list: Caldera JR, Shaw B, Uslan DZ, Yang S
published in: American journal of infection control
information resource reference: Cluster of extensively drug-resistant Shigella sonnei carrying blaCTX-M-15 in Los Angeles, California, 2023 to 2024. Am J Infect Control. 2025 Apr; 53(4):524-526.
journal title abbreviation: Am J Infect Control
publication date: 2024-12-10T00:00:00
year: 2024
type: Academic Article
type: Article
type: Document
type: Information Resource

Pathobiont-driven antibody sialylation through IL-10 undermines vaccination.
PubMed Identifier: 39680460
author list: Tsai CM, Hajam IA, Caldera JR, Chiang AW, Gonzalez C, Du X, Choudhruy B, Li H, Suzuki E, Askarian F, Clark T, Lin B, Wierzbicki IH, Riestra AM, Conrad DJ, Gonzalez DJ, Nizet V, Lewis NE, Liu GY
published in: The Journal of clinical investigation
information resource reference: Pathobiont-driven antibody sialylation through IL-10 undermines vaccination. J Clin Invest. 2024 Dec 16; 134(24).
journal title abbreviation: J Clin Invest
publication date: 2024-12-16T00:00:00
year: 2024
type: Academic Article
type: Article
type: Document
type: Information Resource

Pathobiont-induced suppressive immune imprints thwart T cell vaccine responses.
PubMed Identifier: 39681568
author list: Hajam IA, Tsai CM, Gonzalez C, Caldera JR, L?zaro D?ez M, Du X, Aralar A, Lin B, Duong W, Liu GY
published in: Nature communications
information resource reference: Pathobiont-induced suppressive immune imprints thwart T cell vaccine responses. Nat Commun. 2024 12 16; 15(1):10335.
journal title abbreviation: Nat Commun
publication date: 2024-12-16T00:00:00
year: 2024
type: Academic Article
type: Article
type: Document
type: Information Resource

Real-world clinical impact of plasma cell-free DNA metagenomic next-generation sequencing assay.
PubMed Identifier: 39881594
author list: Kaur I, Shaw B, Multani A, Pham C, Malhotra S, Smith E, Adachi K, Allyn P, Bango Z, Beaird OE, Caldera JR, Chandrasekaran S, Chan L, Cheema R, Daouk S, Deville J, Dong HV, Fan A, Garner O, Gaynor P, Gray H, Gorin A, Kalava S, Kanatani M, Karnaze A, Saleh T, Sharma Y, Stauber S, Vargas M, Veral M, Winston D, Yanagimoto-Ogawa L, Aldrovandi G, Nielsen-Saines K, Fuller T, Jackson N, Uslan D, Schaenman J, Vijayan T, Sakona A, Yang S
published in: Infection control and hospital epidemiology
information resource reference: Real-world clinical impact of plasma cell-free DNA metagenomic next-generation sequencing assay. Infect Control Hosp Epidemiol. 2025 Jan 30; 1-8.
journal title abbreviation: Infect Control Hosp Epidemiol
publication date: 2025-01-30T00:00:00
year: 2025
type: Academic Article
type: Article
type: Document
type: Information Resource

Development and validation of next-generation sequencing-based clinical test for triazole resistance prediction in Aspergillus fumigatus.
PubMed Identifier: 40590562
author list: Caldera JR, Dayo A, Wiederhold N, Yang S
published in: Journal of clinical microbiology
information resource reference: Development and validation of next-generation sequencing-based clinical test for triazole resistance prediction in Aspergillus fumigatus. J Clin Microbiol. 2025 Aug 13; 63(8):e0029125.
journal title abbreviation: J Clin Microbiol
publication date: 2025-07-01T00:00:00
year: 2025
type: Academic Article
type: Article
type: Document
type: Information Resource

Translocation of Viable Gut Microbiota to Mesenteric Adipose Drives Formation of Creeping Fat in Humans.
PubMed Identifier: 32991841
author list: Ha CWY, Martin A, Sepich-Poore GD, Shi B, Wang Y, Gouin K, Humphrey G, Sanders K, Ratnayake Y, Chan KSL, Hendrick G, Caldera JR, Arias C, Moskowitz JE, Ho Sui SJ, Yang S, Underhill D, Brady MJ, Knott S, Kaihara K, Steinbaugh MJ, Li H, McGovern DPB, Knight R, Fleshner P, Devkota S
published in: Cell
information resource reference: Translocation of Viable Gut Microbiota to Mesenteric Adipose Drives Formation of Creeping Fat in Humans. Cell. 2020 10 29; 183(3):666-683.e17.
journal title abbreviation: Cell
publication date: 2020-09-28T00:00:00
year: 2020
type: Academic Article
type: Article
type: Document
type: Information Resource

Clinical next-generation sequencing assay combining full-length gene amplification and shotgun sequencing for the detection of CMV drug resistance mutations.
PubMed Identifier: 37336174
author list: von Bredow B, Caldera JR, Cer?n S, Chan JL, Gray HK, Garner OB, Yang S
published in: Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology
information resource reference: Clinical next-generation sequencing assay combining full-length gene amplification and shotgun sequencing for the detection of CMV drug resistance mutations. J Clin Virol. 2023 08; 165:105520.
journal title abbreviation: J Clin Virol
publication date: 2023-06-08T00:00:00
year: 2023
type: Academic Article
type: Article
type: Document
type: Information Resource

Functional divergence of a bacterial enzyme promotes healthy or acneic skin.
PubMed Identifier: 38052825
author list: Hajam IA, Katiki M, McNally R, L?zaro-D?ez M, Kolar S, Chatterjee A, Gonzalez C, Paulchakrabarti M, Choudhury B, Caldera JR, Desmond T, Tsai CM, Du X, Li H, Murali R, Liu GY
published in: Nature communications
information resource reference: Functional divergence of a bacterial enzyme promotes healthy or acneic skin. Nat Commun. 2023 12 05; 14(1):8061.
journal title abbreviation: Nat Commun
publication date: 2023-12-05T00:00:00
year: 2023
type: Academic Article
type: Article
type: Document
type: Information Resource

The characteristics of pre-existing humoral imprint determine efficacy of S.?aureus vaccines and support alternative vaccine approaches.
PubMed Identifier: 38232694
author list: Caldera JR, Tsai CM, Trieu D, Gonzalez C, Hajam IA, Du X, Lin B, Liu GY
published in: Cell reports. Medicine
information resource reference: The characteristics of pre-existing humoral imprint determine efficacy of S.?aureus vaccines and support alternative vaccine approaches. Cell Rep Med. 2024 01 16; 5(1):101360.
journal title abbreviation: Cell Rep Med
publication date: 2024-01-16T00:00:00
year: 2024
type: Academic Article
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Performance Evaluation of a Commercial Automated Library Preparation System for Clinical Microbial Whole-Genome Sequencing Assays.
PubMed Identifier: 38851385
author list: Caldera JR, Anikst V, Gray H, Tsan A, Sono R, Yang S
published in: The Journal of molecular diagnostics : JMD
information resource reference: Performance Evaluation of a Commercial Automated Library Preparation System for Clinical Microbial Whole-Genome Sequencing Assays. J Mol Diagn. 2024 Aug; 26(8):719-726.
journal title abbreviation: J Mol Diagn
publication date: 2024-06-06T00:00:00
year: 2024
type: Academic Article
type: Article
type: Document
type: Information Resource

Multi-Year Analysis of Respiratory Viral Dynamics Reveals Significance of Rhinovirus in Young Children with Severe Respiratory Illness.
PubMed Identifier: 40277956
author list: Caldera JR, Saleh T, Fuller T, Yang S, Nielsen-Saines K
published in: Infectious disease reports
information resource reference: Multi-Year Analysis of Respiratory Viral Dynamics Reveals Significance of Rhinovirus in Young Children with Severe Respiratory Illness. Infect Dis Rep. 2025 Apr 03; 17(2).
journal title abbreviation: Infect Dis Rep
publication date: 2025-04-03T00:00:00
year: 2025
type: Academic Article
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Knutson, Michelle
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